The GSA Journals, GENETICS and G3: Genes|Genomes|Genetics, are proud to present highlights from research published in 2024. The excellent research and scholarship published over the course of the year is being viewed, downloaded, and cited, which means it’s contributing to the field and helping push knowledge forward.
We invite you to browse these papers, which have been grouped by topic. Just click a topic header to expand the list. You may want to visit our collection of blog posts about papers published in the GSA Journals.
Add to Your Genetic and Genomic Toolkit
References
A Recql5 mutant facilitates complex CRISPR/Cas9-mediated chromosomal engineering in mouse zygotes
Satoru Iwata, Miki Nagahara, Risako Ido, Takashi Iwamoto
GENETICS. June 2024; 227(2).
DOI: 10.1093/genetics/iyae054High-throughput genetic manipulation of multicellular organisms using a machine-vision guided embryonic microinjection robot
Andrew D Alegria, Amey S Joshi, Jorge Blanco Mendana, Kanav Khosla, Kieran T Smith, Benjamin Auch, Margaret Donovan, John Bischof, Daryl M Gohl, Suhasa B Kodandaramaiah
GENETICS. April 2024; 226(4).
DOI: 10.1093/genetics/iyae025OrthoPhyl—streamlining large-scale, orthology-based phylogenomic studies of bacteria at broad evolutionary scales
Earl A Middlebrook, Robab Katani, Jeanne M Fair
G3: Genes|Genomes|Genetics. August 2024; 14(8).
DOI: 10.1093/g3journal/jkae119ONeSAMP 3.0: estimation of effective population size via single nucleotide polymorphism data from one population
Aaron Hong, Rebecca G Cheek, Suhashi Nihara De Silva, Kingshuk Mukherjee, Isha Yooseph, Marco Oliva, Mark Heim, Chris W. Funk, David Tallmon, Christina Boucher
G3: Genes|Genomes|Genetics. October 2024; 14(10).
DOI: 10.1093/g3journal/jkae153Illuminating the Cryptococcus neoformans species complex: unveiling intracellular structures with fluorescent-protein-based markers
Ran Shi, Xiaorong Lin
GENETICS. July 2024; 227(3).
DOI: 10.1093/genetics/iyae059Fourth Chromosome Resource Project: a comprehensive resource for genetic analysis in Drosophila that includes humanized stocks
Michael J Stinchfield, Brandon P Weasner, Bonnie M Weasner, David Zhitomersky, Justin P Kumar, Michael B O’Connor, Stuart J Newfeld
GENETICS. February 2024; 226(20).
DOI: 10.1093/genetics/iyad201Comparative analysis of new mScarlet-based red fluorescent tags in Caenorhabditis elegans
Wen Xi Cao, Daniel M Merritt, Karinna Pe, Michael Cesar, Oliver Hobert
GENETICS. October 2024; 288(2).
DOI: 10.1093/genetics/iyae126Disentangling cobionts and contamination in long-read genomic data using sequence composition
Claudia C Weber
G3: Genes|Genomes|Genetics. November 2024; 14(11).
DOI: 10.1093/g3journal/jkae187
All “Aye-Ayes” on Threatened and Endangered Species at G3
References
Reporting on genomes of endangered and threatened species supports conservation
Lauren M McIntyre
G3: Genes|Genomes|Genetics. December 2024; 14(12).
DOI: 10.1093/g3journal/jkae256A hybrid genome assembly of the endangered aye-aye (Daubentonia madagascariensis)
Cyril J Versoza, Susanne P Pfeifer
G3: Genes|Genomes|Genetics. October 2024; 10(14).
10.1093/g3journal/jkae185The genome of Przewalski’s horse (Equus ferus przewalskii)
Nicole Flack, Lauren Hughes, Jacob Cassens, Maya Enriquez, Samrawit Gebeyehu, Mohammed Alshagawi, Jason Hatfield, Anna Kauffman, Baylor Brown, Caitlin Klaeui, Islam F Mabrouk, Carrie Walls, Taylor Yeater, Anne Rivas, Christopher Faulk
G3: Genes|Genomes|Genetics. August 2024; 14(8).
DOI: 10.1093/g3journal/jkae113First whole-genome sequence and assembly of the Ecuadorian brown-headed spider monkey (Ateles fusciceps fusciceps), a critically endangered species, using Oxford Nanopore Technologies
Gabriela Pozo, Martina Albuja-Quintana, Lizbeth Larreátegui, Bernardo Gutiérrez, Nathalia Fuentes, Felipe Alfonso-Cortés, Maria de Lourdes Torres
G3: Genes|Genomes|Genetics. March 2024; 14(3).
DOI: 10.1093/g3journal/jkae014The reference genome of an endangered Asteraceae, Deinandra increscens subsp. villosa, endemic to the Central Coast of California
Susan L McEvoy, Rachel S Meyer, Kristen E Hasenstab-Lehman, C Matt Guilliams
G3: Genes|Genomes|Genetics. August 2024; 14(8).
DOI: 10.1093/g3journal/jkae117A genome sequence for the threatened whitebark pine
David B Neale, Aleksey V Zimin, Amy Meltzer, Akriti Bhattarai, Maurice Amee, Laura Figueroa Corona, Brian J Allen, Daniela Puiu, Jessica Wright, Amanda R De La Torre, Patrick E McGuire, Winston Timp, Steven L Salzberg, Jill L Wegrzyn
G3: Genes|Genomes|Genetics. May 2024; 14(5).
DOI: 10.1093/g3journal/jkae061
Plant-Based Insights
References
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Deleterious phenotypes in wild Arabidopsis arenosa populations are common and linked to runs of homozygosity
A Cristina Barragan, Maximilian Collenberg, Rebecca Schwab, Sonja Kersten, Merijn H L Kerstens, Doubravka Požárová, Ilja Bezrukov, Felix Bemm, Filip Kolár, Detlef Weigel
G3: Genes|Genomes|Genetics. March 2024; 14(3).
DOI: 10.1093/g3journal/jkad290 Crossover shortage in potato is caused by StMSH4 mutant alleles and leads to either highly uniform unreduced pollen or sterility
Corentin R Clot, Dennis Klein, Joey Koopman, Cees Schuit, Christel J M Engelen, Ronald C B Hutten, Matthijs Brouwer, Richard G F Visser, Martina Jurani, Herman J van Eck
GENETICS, January 2024; 226(10).
DOI: 10.1093/genetics/iyad194Chromosome-level phased genome assembly of “Antonovka” identified candidate apple scab-resistance genes highly homologous to HcrVf2 and HcrVf1 on linkage group 1
Anže Švara, Honghe Sun, Zhangjun Fei, Awais Khan
G3: Genes|Genomes|Genetics. January 2024; 14(1)
DOI: 10.1093/g3journal/jkad253Dissecting the major genetic components underlying cotton lint development
Yali Sun, Yuman Yuan, Shoupu He, Warwick Stiller, Iain Wilson, Xiongming Du, Qian-Hao Zhu
GENETICS. February 2024; 226(2).
DOI: 10.1093/genetics/iyad219The groundnut improvement network for Africa (GINA) germplasm collection: a unique genetic resource for breeding and gene discovery
Soukeye Conde, Jean-François Rami, David K Okello, Aissatou Sambou, Amade Muitia, Richard Oteng-Frimpong, Lutangu Makweti, Dramane Sako, Issa Faye, Justus Chintu, Adama M Coulibaly, Amos Miningou, James Y Asibuo, Moumouni Konate, Essohouna M Banla, Maguette Seye, Yvette R Djiboune, Hodo-Abalo Tossim, Samba N Sylla, David Hoisington, Josh Clevenger, Ye Chu, Shyam Tallury, Peggy Ozias-Akins, Daniel Fonceka
G3: Genes|Genomes|Genetics. January 2024; 14(1).
DOI: 10.1093/g3journal/jkad244GWAS supported by computer vision identifies large numbers of candidate regulators of in planta regeneration in Populus trichocarpaMichael F Nagle, Jialin Yuan, Damanpreet Kaur, Cathleen Ma, Ekaterina Peremyslova, Yuan Jiang, Alexa Niño de Rivera, Sara Jawdy, Jin-Gui Chen, Kai Feng, Timothy B Yates, Gerald A Tuskan, Wellington Muchero, Li Fuxin, Steven H Strauss
G3: Genes|Genomes|Genetics. April 2024; 14(4).
DOI: 10.1093/g3journal/jkae026The unusual predominance of maintenance DNA methylation in Spirodela polyrhiza
Alex Harkess, Adam J Bewick, Zefu Lu, Paul Fourounjian, Todd P Michael, Robert J Schmitz, Blake C Meyers
G3: Genes|Genomes|Genetics. April 2024; 14(4).
DOI: 10.1093/g3journal/jkae004
Community Resources at GENETICS
References
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The Arabidopsis Information Resource in 2024
Leonore Reiser, Erica Bakker, Sabarinath Subramaniam, Xingguo Chen, Swapnil Sawant, Kartik Khosa, Trilok Prithvi, Tanya Z Berardini
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyae027 Mouse Genome Informatics: an integrated knowledgebase system for the laboratory mouse
Richard M Baldarelli, Cynthia L Smith, Martin Ringwald, Joel E Richardson, Carol J Bult, Mouse Genome Informatics Group
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyae031PomBase: a Global Core Biodata Resource—growth, collaboration, and sustainability
Kim M Rutherford, Manuel Lera-Ramírez, Valerie Wood
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyae007WormBase 2024: status and transitioning to Alliance infrastructure
Paul W Sternberg, Kimberly Van Auken, Qinghua Wang, Adam Wright, Karen Yook, Magdalena Zarowiecki, Valerio Arnaboldi, Andrés Becerra, Stephanie Brown, Scott Cain, Juancarlos Chan, Wen J Chen, Jaehyoung Cho, Paul Davis, Stavros Diamantakis, Sarah Dyer, Dionysis Grigoriadis, Christian A Grove, Todd Harris, Kevin Howe, Ranjana Kishore, Raymond Lee, Ian Longden, Manuel Luypaert, Hans-Michael Müller, Paulo Nuin, Mark Quinton-Tulloch, Daniela Raciti, Tim Schedl, Gary Schindelman, Lincoln Stein
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyae050FlyBase: updates to the Drosophila genes and genomes database
Arzu Öztürk-Çolak, Steven J Marygold, Giulia Antonazzo, Helen Attrill, Damien Goutte-Gattat, Victoria K Jenkins, Beverley B Matthews, Gillian Millburn, Gilberto dos Santos, Christopher J Tabone, FlyBase Consortium
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyad211Enhanced pan-genomic resources at the maize genetics and genomics database
Ethalinda K Cannon, John L Portwood, II, Rita K Hayford, Olivia C Haley, Jack M Gardiner, Carson M Andorf, Margaret R Woodhouse
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyae036Updates to the Alliance of Genome Resources central infrastructure
The Alliance of Genome Resources Consortium
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyae049Echinobase: a resource to support the echinoderm research community
Cheryl A Telmer, Kamran Karimi, Macie M Chess, Sergei Agalakov, Bradley I Arshinoff, Vaneet Lotay, Dong Zhuo Wang, Stanley Chu, Troy J Pells, Peter D Vize, Veronica F Hinman, Charles A Ettensohn
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyae002What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species
Evelina Y Basenko, Achchuthan Shanmugasundram, Ulrike Böhme, David Starns, Paul A Wilkinson, Helen R Davison, Kathryn Crouch, Gareth Maslen, Omar S Harb, Beatrice Amos, Mary Ann McDowell, Jessica C Kissinger, David S Roos, Andrew Jones
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyae035
Evolution and Ancestry
References
A general and efficient representation of ancestral recombination graphs
Yan Wong, Anastasia Ignatieva, Jere Koskela, Gregor Gorjanc, Anthony W Wohns, Jerome Kelleher
GENETICS. September 2024; 228(1).
DOI: 10.1093/genetics/iyae100Long read genome assembly of Automeris io (Lepidoptera: Saturniidae) an emerging model for the evolution of deimatic displays
Chelsea Skojec, R Keating Godfrey, Akito Y Kawahara
G3: Genes|Genomes|Genetics. March 2024; 14(3).
DOI: 10.1093/g3journal/jkad292Characterization of the Pristionchus pacificus “epigenetic toolkit” reveals the evolutionary loss of the histone methyltransferase complex PRC2
Audrey L Brown, Adriaan B Meiborg, Mirita Franz-Wachtel, Boris Macek, Spencer Gordon, Ofer Rog, Cameron J Weadick, Michael S Werner
GENETICS. May 2024; 227(1).
DOI: 10.1093/genetics/iyae041Evolutionary graph theory beyond single mutation dynamics: on how network-structured populations cross fitness landscapes
Yang Ping Kuo, Oana Carja
GENETICS. June 2024; 227(2).
DOI: 10.1093/genetics/iyae055Unveiling the evolutionary history of lingonberry (Vaccinium vitis-idaea L.) through genome sequencing and assembly of European and North American subspecies
Kaede Hirabayashi, Samir C Debnath, Gregory L Owens
G3: Genes|Genomes|Genetics. March 2024; 14(3).
DOI: 10.1093/g3journal/jkad294Strain-specific evolution and host-specific regulation of transposable elements in the model plant symbiont Rhizophagus irregularis
Jordana Inácio Nascimento Oliveira, Nicolas Corradi
G3: Genes|Genomes|Genetics. May 2024; 14(5).
DOI: 10.1093/g3journal/jkae055Using encrypted genotypes and phenotypes for collaborative genomic analyses to maintain data confidentiality
Tianjing Zhao, Fangyi Wang, Richard Mott, Jack Dekkers, Hao Cheng
GENETICS. March 2024; 226(3).
DOI: 10.1093/genetics/iyad210Shared evolutionary processes shape landscapes of genomic variation in the great apes
Murillo F Rodrigues, Andrew D Kern, Peter L Ralph
GENETICS. April 2024; 226(4).
DOI: 10.1093/genetics/iyae006
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View all posts by Sarah Bay »Read more in Science & Publishing
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New resources for navigating the maze of maize genomics
A unified VCF dataset for maize and SNPversity 2.0 are reported in a new paper in G3.
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Sarit Smolikove joins GENETICS as Associate Editor
A new Associate Editor is joining GENETICS in the Genome Integrity Transmission section. We’re excited to welcome Sarit Smolikove to the editorial team.
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Andrés Bendesky joins G3 as Associate Editor
A new Associate Editor is joining G3. We’re excited to welcome Andrés Bendesky to the editorial team.