New in G3: Mosquitoes, cotton, & CYCLoPs

Check out the June issue of G3!

MEETING REPORT
Meeting Report on Experimental Approaches to Evolution and Ecology Using Yeast and Other Model Systems

Audrey P. Gasch and Gaël Yvert

G3 June 2015 5:1021-1023; Early Online April 22, 2015, doi:10.1534/g3.115.018614

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INVESTIGATIONS
Analysis of RNA Interference Lines Identifies New Functions of Maternally-Expressed Genes Involved in Embryonic Patterning in Drosophila melanogaster

Niankun Liu and Paul Lasko

G3 June 2015 5:1025-1034; Early Online March 31, 2015, doi:10.1534/g3.115.017517

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Novel Genes Affecting Blood Pressure Detected Via Gene-Based Association Analysis

Huan Zhang, Xing-Bo Mo, Tan Xu, Xiao-Qing Bu, Shu-Feng Lei, and Yong-Hong Zhang

G3 June 2015 5:1035-1042; Early Online March 26, 2015, doi:10.1534/g3.115.016915

Abstract | Full Text | Full Text (PDF) | Supporting Information

Single-Cell Based Quantitative Assay of Chromosome Transmission Fidelity

Jin Zhu, Dominic Heinecke, Wahid A. Mulla, William D. Bradford, Boris Rubinstein, Andrew Box, Jeffrey S. Haug, and Rong Li

G3 June 2015 5:1043-1056; Early Online March 30, 2015, doi:10.1534/g3.115.017913

Abstract | Full Text | Full Text (PDF) | Supporting Information

X Chromosome and Autosome Dosage Responses in Drosophila melanogaster Heads

Zhen-Xia Chen and Brian Oliver

G3 June 2015 5:1057-1063; Early Online April 7, 2015, doi:10.1534/g3.115.017632

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Response of Polygenic Traits Under Stabilizing Selection and Mutation When Loci Have Unequal Effects

Kavita Jain and Wolfgang Stephan

G3 June 2015 5:1065-1074; Early Online March 31, 2015, doi:10.1534/g3.115.017970

Abstract | Full Text | Full Text (PDF) | Supporting Information

Gene Network Reconstruction by Integration of Prior Biological Knowledge

Yupeng Li and Scott A. Jackson

G3 June 2015 5:1075-1079; Early Online March 30, 2015, doi:10.1534/g3.115.018127

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Insights into Ongoing Evolution of the Hexachlorocyclohexane Catabolic Pathway from Comparative Genomics of Ten Sphingomonadaceae Strains

Stephen L. Pearce, John G. Oakeshott, and Gunjan Pandey

G3 June 2015 5:1081-1094; Early Online April 7, 2015, doi:10.1534/g3.114.015933

Abstract | Full Text | Full Text (PDF) | Supporting Information

 

BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping

Amanda M. Hulse-Kemp, Hamid Ashrafi, Kevin Stoffel, Xiuting Zheng, Christopher A. Saski, Brian E. Scheffler, David D. Fang, Z. Jeffrey Chen, Allen Van Deynze, and David M. Stelly

G3 June 2015 5:1095-1105; Early Online April 9, 2015, doi:10.1534/g3.115.017749

Abstract | Full Text | Full Text (PDF) | Supporting Information

Novel Genes Critical for Hypoxic Preconditioning in Zebrafish Are Regulators of Insulin and Glucose Metabolism

Tania Manchenkov, Martina P. Pasillas, Gabriel G. Haddad, and Farhad B. Imam

G3 June 2015 5:1107-1116; Early Online April 3, 2015, doi:10.1534/g3.115.018010

Abstract | Full Text | Full Text (PDF) | Supporting Information

Comparative Genetics of Seed Size Traits in Divergent Cereal Lineages Represented by Sorghum (Panicoidae) and Rice (Oryzoidae)

Dong Zhang, Jingping Li, Rosana O. Compton, Jon Robertson, Valorie H. Goff, Ethan Epps, Wenqian Kong, Changsoo Kim, and Andrew H. Paterson

G3 June 2015 5:1117-1128; Early Online March 31, 2015, doi:10.1534/g3.115.017590

Abstract | Full Text | Full Text (PDF) | Supporting Information

The Drosophila melanogaster Mutants ap^blot and ap^Xasta Affect an Essential apterous Wing Enhancer

Dimitri Bieli, Oguz Kanca, Daryl Gohl, Alexandru Denes, Paul Schedl, Markus Affolter, and Martin Müller

G3 June 2015 5:1129-1143; Early Online April 2, 2015, doi:10.1534/g3.115.017707

Abstract | Full Text | Full Text (PDF) | Supporting Information

Long-Read Single Molecule Sequencing to Resolve Tandem Gene Copies: The Mst77Y Region on the Drosophila melanogaster Y Chromosome

Flavia J. Krsticevic, Carlos G. Schrago, A. Bernardo Carvalho

G3 June 2015 5:1145-1150; Early Online April 9, 2015, doi:10.1534/g3.115.017277

Abstract | Full Text | Full Text (PDF) | Supporting Information

Tools for Anopheles gambiae Transgenesis

Gloria Volohonsky, Olivier Terenzi, Julien Soichot, Daniel A. Naujoks, Tony Nolan, Nikolai Windbichler, Delphine Kapps, Andrea L. Smidler, Anaïs Vittu, Giulia Costa, Stefanie Steinert, Elena A. Levashina, Stéphanie A. Blandin, and Eric Marois

G3 June 2015 5:1151-1163; Early Online April 13, 2015, doi:10.1534/g3.115.016808

Abstract | Full Text | Full Text (PDF) | Supporting Information

Genome-Wide Association Study on Resistance to Stalk Rot Diseases in Grain Sorghum

Adedayo Adeyanju, Christopher Little, Jianming Yu, Tesfaye Tesso

G3 June 2015 5:1165-1175; Early Online April 16, 2015, doi:10.1534/g3.114.016394

Abstract | Full Text | Full Text (PDF) | Supporting Information

Caenorhabditis elegans TBX-2 Directly Regulates Its Own Expression in a Negative Autoregulatory Loop

Angenee C. Milton and Peter G. Okkema

G3 June 2015 5:1177-1186; Early Online April 14, 2015, doi:10.1534/g3.115.018101

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Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Amanda M. Hulse-Kemp, Jana Lemm, Joerg Plieske, Hamid Ashrafi, Ramesh Buyyarapu, David D. Fang, James Frelichowski, Marc Giband, Steve Hague, Lori L. Hinze, Kelli J. Kochan, Penny K. Riggs, Jodi A. Scheffler, Joshua A. Udall, Mauricio Ulloa, Shirley S. Wang, Qian-Hao Zhu, Sumit K. Bag, Archana Bhardwaj, John J. Burke, Robert L. Byers, Michel Claverie, Michael A. Gore, David B. Harker, Md S. Islam, Johnie N. Jenkins, Don C. Jones, Jean-Marc Lacape, Danny J. Llewellyn, Richard G. Percy, Alan E. Pepper, Jesse A. Poland, Krishan Mohan Rai, Samir V. Sawant, Sunil Kumar Singh, Andrew Spriggs, Jen M. Taylor, Fei Wang, Scott M. Yourstone, Xiuting Zheng, Cindy T. Lawley, Martin W. Ganal, Allen Van Deynze, Iain W. Wilson, David M. Stelly

G3 June 2015 5:1187-1209; Early Online April 22, 2015, doi:10.1534/g3.115.018416

Abstract | Full Text | Full Text (PDF) | Supporting Information

The Mosaic Mutants of Cucumber: A Method to Produce Knock-Downs of Mitochondrial Transcripts

Angel R. Del Valle-Echevarria, Agnieszka Kielkowska, Grzegorz Bartoszewski, and Michael J. Havey

G3 June 2015 5:1211-1221; Early Online April 14, 2015, doi:10.1534/g3.115.017053

Abstract | Full Text | Full Text (PDF) | Supporting Information

CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in Saccharomyces cerevisiae

Judice L. Y. Koh, Yolanda T. Chong, Helena Friesen, Alan Moses, Charles Boone, Brenda J. Andrews, and Jason Moffat

G3 June 2015 5:1223-1232; Early Online April 15, 2015, doi:10.1534/g3.115.017830

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Functional Analysis of Developmentally Regulated Genes chs7 and sec22 in the Ascomycete Sordaria macrospora

Stefanie Traeger and Minou Nowrousian

G3 June 2015 5:1233-1245; Early Online April 14, 2015, doi:10.1534/g3.115.017681

Abstract | Full Text | Full Text (PDF) | Supporting Information

Effects of Genic Base Composition on Growth Rate in G+C-rich Genomes

Yogeshwar D. Kelkar, Daniel S. Phillips,and Howard Ochman

G3 June 2015 5:1247-1252; Early Online April 20, 2015, doi:10.1534/g3.115.016824

Abstract | Full Text | Full Text (PDF) | Supporting Information

Improved Detection and Characterization of Copy Number Variations Among Diverse Pig Breeds by Array CGH

Jiying Wang, Jicai Jiang, Haifei Wang, Huimin Kang, Qin Zhang, Jian-Feng Liu

G3 June 2015 5:1253-1261; Early Online April 22, 2015, doi:10.1534/g3.115.018473

Abstract | Full Text | Full Text (PDF) | Supporting Information

Neurospora Heterokaryons with Complementary Duplications and Deficiencies in Their Constituent Nuclei Provide an Approach to Identify Nucleus-Limited Genes

Dev Ashish Giri, S. Rekha, and Durgadas P. Kasbekar

G3 June 2015 5:1263-1272; Early Online April 20, 2015, doi:10.1534/g3.115.017616

Abstract | Full Text | Full Text (PDF) | Supporting Information

A Dynamic Mobile DNA Family in the Yeast Mitochondrial Genome

Baojun Wu and Weilong Hao

G3 June 2015 5:1273-1282; Early Online April 20, 2015, doi:10.1534/g3.115.017822

Abstract | Full Text | Full Text (PDF) | Supporting Information

MUTANT SCREEN REPORTS
A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish

Helen Ngoc Bao Quach, Shijie Tao, Pavle Vrljicak, Adita Joshi, Hua Ruan, Rashmi Sukumaran, Gaurav K. Varshney, Matthew C. LaFave, The Ds Screen Team, Shawn M. Burgess, Christoph Winkler, Alexander Emelyanov, Sergey Parinov, and Karuna Sampath

G3 June 2015 5:1283-1299; Early Online April 2, 2015, doi:10.1534/g3.114.015842

Abstract | Full Text | Full Text (PDF) | Supporting Information

Mutations that Separate the Functions of the Proofreading Subunit of the Escherichia coli Replicase

Zakiya Whatley and Kenneth N. Kreuzer

G3 June 2015 5:1301-1311; Early Online April 15, 2015, doi:10.1534/g3.115.017285

Abstract | Full Text | Full Text (PDF)