New in G3: Genomic selection, ortholog detection, and Drosophila lines with global diversity

Investigations

A Bayesian Model for the Analysis of Transgenerational Epigenetic Variation

Luis Varona, Sebastián Munilla, Elena Flavia Mouresan, Aldemar González-Rodríguez, Carlos Moreno, and Juan Altarriba

G3 April 2015 5:477-485; Early Online January 23, 2015, doi:10.1534/g3.115.016725

Abstract | Full Text | Full Text (PDF) | Supporting Information

Identification of eQTLs for Hepatic Xbp1s and Socs3 Gene Expression in Mice Fed a High-Fat, High-Caloric Diet

Sarina Pasricha, Jane Kenney-Hunt, Kristy Anderson, Nadereh Jafari, Rabea A. Hall, Frank Lammert, James Cheverud, and Richard M. Green

G3 April 2015 5:487-496; Early Online January 23, 2015, doi:10.1534/g3.115.016626

Abstract | Full Text | Full Text (PDF) | Supporting Information

The Transcriptional Stress Response of Candida albicans to Weak Organic Acids

Fabien Cottier, Alrina Shin Min Tan, Jinmiao Chen, Josephine Lum, Francesca Zolezzi, Michael Poidinger, and Norman Pavelka

G3 April 2015 5:497-505; Early Online January 29, 2015, doi:10.1534/g3.114.015941

Abstract | Full Text | Full Text (PDF) | Supporting Information

The Phage Mu Middle Promoter P_m Contains a Partial UP Element

Ji Ma and Martha M. Howe

G3 April 2015 5:507-516; Early Online February 2, 2015, doi:10.1534/g3.114.013607

Abstract | Full Text | Full Text (PDF)

Combined QTL and Selective Sweep Mappings with Coding SNP Annotation and cis-eQTL Analysis Revealed PARK2 and JAG2 as New Candidate Genes for Adiposity Regulation

Pierre-François Roux, Simon Boitard, Yuna Blum, Brian Parks, Alexandra Montagner, Etienne Mouisel, Anis Djari, Diane Esquerré, Colette Désert, Morgane Boutin, Sophie Leroux, Frédéric Lecerf, Elisabeth Le Bihan-Duval, Christophe Klopp, Bertrand Servin, Frédérique Pitel, Michel Jean Duclos, Hervé Guillou, Aldons J. Lusis, Olivier Demeure, and Sandrine Lagarrigue

G3 April 2015 5:517-529; Early Online February 3, 2015, doi:10.1534/g3.115.016865

Abstract | Full Text | Full Text (PDF) | Supporting Information

Heritable Variation in Courtship Patterns in Drosophila melanogaster

Bryn E. Gaertner, Elizabeth A. Ruedi, Lenovia J. McCoy, Jamie M. Moore, Mariana F. Wolfner, and Trudy F. C. Mackay

G3 April 2015 5:531-539; Early Online February 3, 2015, doi:10.1534/g3.114.014811

Abstract | Full Text | Full Text (PDF) | Supporting Information

Selection for Silage Yield and Composition Did Not Affect Genomic Diversity Within the Wisconsin Quality Synthetic Maize Population

Aaron J. Lorenz, Timothy M. Beissinger, Renato Rodrigues Silva, and Natalia de Leon

G3 April 2015 5:541-549; Early Online February 2, 2015, doi:10.1534/g3.114.015263

Abstract | Full Text | Full Text (PDF) | Supporting Information

Comparison of Larval and Adult Drosophila Astrocytes Reveals Stage-Specific Gene Expression Profiles

Yanmei Huang, Fanny S. Ng, and F. Rob Jackson

G3 April 2015 5:551-558; Early Online February 4, 2015, doi:10.1534/g3.114.016162

Abstract | Full Text | Full Text (PDF) | Supporting Information

Scanning the Effects of Ethyl Methanesulfonate on the Whole Genome of Lotus japonicus Using Second-Generation Sequencing Analysis

Nur Fatihah Mohd-Yusoff, Pradeep Ruperao, Nurain Emylia Tomoyoshi, David Edwards, Peter M. Gresshoff, Bandana Biswas, and Jacqueline Batley

G3 April 2015 5:559-567; Early Online February 6, 2015, doi:10.1534/g3.114.014571

Abstract | Full Text | Full Text (PDF)

Increased Prediction Accuracy in Wheat Breeding Trials Using a Marker × Environment Interaction Genomic Selection Model

Marco Lopez-Cruz, Jose Crossa, David Bonnett, Susanne Dreisigacker, Jesse Poland, Jean-Luc Jannink, Ravi P. Singh, Enrique Autrique, and Gustavo de los Campos

G3 April 2015 5:569-582; Early Online February 6, 2015, doi:10.1534/g3.114.016097

Abstract | Full Text | Full Text (PDF) | Supporting Information

Adaptive Evolution of Genes Involved in the Regulation of Germline Stem Cells in Drosophila melanogaster and D. simulans

Heather A. Flores, Vanessa L. Bauer DuMont, Aalya Fatoo, Diana Hubbard, Mohammed Hijji, Daniel A. Barbash, and Charles F. Aquadro

G3 April 2015 5:583-592; Early Online February 9, 2015, doi:10.1534/g3.114.015875

Abstract | Full Text | Full Text (PDF) | Supporting Information

Global Diversity Lines–A Five-Continent Reference Panel of Sequenced Drosophila melanogaster Strains

Jennifer K. Grenier, J. Roman Arguello, Margarida Cardoso Moreira, Srikanth Gottipati, Jaaved Mohammed, Sean R. Hackett, Rachel Boughton, Anthony J. Greenberg, and Andrew G. Clark

G3 April 2015 5:593-603; Early Online February 11, 2015, doi:10.1534/g3.114.015883

Abstract | Full Text | Full Text (PDF) | Supporting Information

Gene Regulation by H-NS as a Function of Growth Conditions Depends on Chromosomal Position in Escherichia coli

Elisa Brambilla and Bianca Sclavi

G3 April 2015 5:605-614; Early Online February 19, 2015, doi:10.1534/g3.114.016139

Abstract | Full Text | Full Text (PDF) | Supporting Information

Accuracy of Whole-Genome Prediction Using a Genetic Architecture-Enhanced Variance-Covariance Matrix

Zhe Zhang, Malena Erbe, Jinlong He, Ulrike Ober, Ning Gao, Hao Zhang, Henner Simianer, and Jiaqi Li

G3 April 2015 5:615-627; Early Online February 9, 2015, doi:10.1534/g3.114.016261

Abstract | Full Text | Full Text (PDF) | Supporting Information

Rock, Paper, Scissors: Harnessing Complementarity in Ortholog Detection Methods Improves Comparative Genomic Inference

M. Cyrus Maher and Ryan D. Hernandez

G3 April 2015 5:629-638; Early Online February 23, 2015, doi:10.1534/g3.115.017095

Abstract | Full Text | Full Text (PDF) | Supporting Information

Conserved RNA-Binding Proteins Required for Dendrite Morphogenesis in Caenorhabditis elegans Sensory Neurons

Simona Antonacci, Daniel Forand, Margaret Wolf, Courtney Tyus, Julia Barney, Leah Kellogg, Margo A. Simon, Genevieve Kerr, Kristen L. Wells, Serena Younes, Nathan T. Mortimer, Eugenia C. Olesnicky, and Darrell J. Killian

G3 April 2015 5:639-653; Early Online February 10, 2015, doi:10.1534/g3.115.017327

Abstract | Full Text | Full Text (PDF) | Supporting Information

RIG: Recalibration and Interrelation of Genomic Sequence Data with the GATK

Ryan F. McCormick, Sandra K. Truong, and John E. Mullet

G3 April 2015 5:655-665; Early Online February 13, 2015, doi:10.1534/g3.115.017012

Abstract | Full Text | Full Text (PDF) | Supporting Information

Drosophila melanogaster Activating Transcription Factor 4 Regulates Glycolysis During Endoplasmic Reticulum Stress

Ji Eun Lee, McKenna Oney, Kimberly Frizzell, Nitin Phadnis, and Julie Hollien

G3 April 2015 5:667-675; Early Online February 13, 2015, doi:10.1534/g3.115.017269

Abstract | Full Text | Full Text (PDF) | Supporting Information

Mutant Screen Report

A Genetic Screen and Transcript Profiling Reveal a Shared Regulatory Program for Drosophila Linker Histone H1 and Chromatin Remodeler CHD1

Harsh Kavi, Xingwu Lu, Na Xu, Boris A. Bartholdy, Elena Vershilova, Arthur I. Skoultchi, and Dmitry V. Fyodorov

G3 April 2015 5:677-687; Early Online January 27, 2015, doi:10.1534/g3.115.016709

Abstract | Full Text | Full Text (PDF) | Supporting Information